The RMA system for academic use can be download here.
RMA system (size 1.8 M)

This step-by-step RMA guide covers the basic strategy for searching unique peptide motifs by RMA system, describes the format and significance of the searched output and discusses the use of RMA tools to extract and distinguish different levels of uniqueness of unique peptide motifs.

Setting up a RMA search

• Step 1. Plan the search
• Step 2. Enter the family sequences (or import sequence files)
• Step 3. Choose automatic or semi-automatic for RMA programs
• Step 4. Specify the appropriate search parameters
• Step 5. Execute the program

Descriptions of the RMA output

Automatic RMA

Semi-Automatic RMA

• CASE 1. Merge Operations
• CASE 2. Trim Merge Operations
• CASE 3. Strict Merge Operations
• CASE 4. Strict Trim Merge Operations

The priority for ranking the unique peptide motifs