Structural Comparison:
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得到模擬的蛋白質結構後,可以利用結構比對方法搜尋相近的蛋白質,了解相關蛋白質的功能特性。

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iSARST
Integrated SARST web server for rapid protein structural similarity searches

iSARST is a web server for efficient protein structural similarity searches. It is a multi-processor, batch-processing and integrated implementation of several structural comparison tools and two database searching methods: SARST for common structural homologs and CPSARST for homologs with circular permutations. 

iSARST在多工而平行化的作業環境下整合了數種結構比對工具及兩個高效率的搜尋方法:適合尋找一般類似物的 SARST 及專門搜尋環形序列重組類似物的CPSARST。

iSARST允許使用者一次輸入多筆蛋白質結構。資料輸入後,伺服器會先以SARST/ CPSARST搜尋結構資料庫,再用高準確率的結構比對軟體重新計算所得蛋白質與查詢蛋白質間的結構相似度並按相似度大小列出清單,以求快速回報資料並確保所得資訊的高準確度。

CPred

CPred
the Circular Permutation Site Predictor

The first practical method for predicting viable CP sites.

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CPDB
the Circular Permutation Database

The CPDB provides resources for studying CP and CP relationships among protein structures. This site also offers viable CP site predictions in order to facilitate the application of CP in academic researches and biotechnological developments.

pdb

Combinatorial Extension (CE)

A method for comparing and aligning protein structures

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