This tool produces the alignment of two given sequences using BLAST
engine for local alignment.
Program
blastn
blastp
tblastn
blastx
tblastx
Matrix
Not Applicable
Parameters used in
BLASTN
program only:
Reward for a match:
Penalty for a mismatch:
Use
Mega BLAST
Strand option
Both strands
Top strand
Reverse strand
Open gap
and extension gap
penalties
gap x_dropoff
expect
word size
Filter
Sequence 1
Enter sequence in FASTA format
from:
to:
or upload FASTA file
Sequence 2
Enter sequence in FASTA format
from:
to:
or upload FASTA file
Comments and suggestions to
blast-help@ncbi.nlm.nih.gov
